WebPhosR is a package for the comprenhensive analysis of phosphoproteomic data. There are two major components to PhosR: processing and downstream analysis. PhosR consists of various processing tools for phosphoproteomics data including filtering, imputation, normalisation, and functional analysis for inferring active kinases and signalling pathways. WebPhosR is a package for the comprehensive analysis of phosphoproteomic data. There are two major components to PhosR: processing and downstream analysis. PhosR consists …
Bioconductor Phosr :: Anaconda.org
WebApr 12, 2024 · PhosR • 301 views ADD COMMENT • link updated 10 months ago by ATpoint ★ 2.3k • written 10 months ago by ksci ▴ 10 WebMar 2, 2024 · Download stats for annotation package PhosR This page was generated on 2024-03-02 14:12:47 -0500 (Thu, 02 Mar 2024). PhosR home page: release version, devel version. Number of downloads for annotation package PhosR, year by year, from 2024 back to 2009 (years with no downloads are omitted): 2024 crowdex
PhosR: A set of methods and tools for comprehensive analysis of ...
WebLet us start with gene-centric analysis. Such analysis can be directly applied to proteomics data. It can also be applied to phosphoproteomic data by using the phosCollapse function to summarise phosphosite information to the gene level. suppressPackageStartupMessages ( { library(PhosR) library(ClueR) library(ggplot2) library(parallel) }) WebDec 8, 2024 · In a single run, PhosPiR provides data clean-up, fast data overview, multiple statistical testing, differential expression analysis, phosphosite annotation and translation across species, multilevel enrichment analyses, proteome-wide kinase activity and substrate mapping and network hub analysis. WebThe following demonstrates finding pathways that are enriched in insulin stimulation compared to basal. directPA package has built in pathway annotations and PhosR package implements both over-representation test and rank-based test. The pathway annotations included in directPA are from KEGG database and Reactome database. building a computer motherboard